libpappsomspp
Library for mass spectrometry
peptidesemienzyme.h
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1
2/*******************************************************************************
3 * Copyright (c) 2016 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24
25#pragma once
26
28
29
30namespace pappso
31{
32
33
34/** \brief cut a regular peptide obtained with an enzyme at any position from
35 * Nter or Cter
36 *
37 * WORK IN PROGRESS
38 * */
41{
42 public:
44 virtual ~PeptideSemiEnzyme();
45
46 // EnzymeProductInterface
47 void setPeptide(std::int8_t sequence_database_id,
48 const ProteinSp &protein_sp,
49 bool is_decoy,
50 const QString &peptide,
51 unsigned int start,
52 bool is_nter,
53 unsigned int missed_cleavage_number,
54 bool semi_enzyme) override;
55
56 // PeptideSinkInterface
57 void
59 {
60 m_sink = sink;
61 };
62
63
64 private:
65 EnzymeProductInterface *m_sink = nullptr;
66};
67
68
69} // namespace pappso
cut a regular peptide obtained with an enzyme at any position from Nter or Cter
void setSink(EnzymeProductInterface *sink) override
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< const Protein > ProteinSp
shared pointer on a Protein object
Definition: protein.h:47