libpappsomspp
Library for mass spectrometry
fastareader.h
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1
2/*******************************************************************************
3 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 ******************************************************************************/
21
22#pragma once
23
24#include <QIODevice>
25#include <QFile>
26#include <QTextStream>
28
29namespace pappso
30{
31class FastaFileIndexer;
32
34{
36
37 public:
40
41 void parse(QFile &fastaFile);
42 void parse(QIODevice *p_inputstream);
43
44 protected:
45 void parseOnlyOne(QTextStream &p_in);
46
47 private:
49};
50} // namespace pappso
FastaHandlerInterface & m_handler
Definition: fastareader.h:48
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39